Whole genome Illumina MiSeq sequence of Shigella sonnei - SRA

SRX5961747: Whole genome Illumina MiSeq sequence of Shigella sonnei
1 ILLUMINA (Illumina MiSeq) run: 883,909 spots, 418.8M bases, 257.2Mb downloads

External Id: EXT00359979

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN11948150 • SRS4870972 • All experiments • All runs

Organism: Shigella sonnei

Library:

Name: Nextera XT library SEQ000090404

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward251 reverse

Runs: 1 run, 883,909 spots, 418.8M bases, 257.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR9189601	883,909	418.8M	257.2Mb	2019-06-03

ID:: 7997253

SRA

Sequence Read Archive

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